Retired Army Guy,
It's too bad you didn't join this forum prior to your purchase. Your misalignment problem is very common to Savages at all "price" levels. A search on here would have given you a heads up to this and other idiosyncrasies.
$1100 is far from "cheap" but still won't guarantee the quality of a custom.
Many on this forum have fixed the problem you have with Burris Signature rings/inserts.
Savage test firings normally dont detect or cure the misalignment problem. But now in your case they will be forced to. Most likely by changing barrel alignment with a different recoil lug. But if you change barrels in the future it may just come back!
I've seen them so far off that windage would not zero. With an aftermarket barrel I had one that would not zero with elevation.
Life is too short to sweat these little things. Buy a set of Burris rings when you get it back. You can get your centered windage plus any degree of elevation you desire.
Good luck,
Randy